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Disputes & Chargebacks
Jul 7, 2025

Chargebee Disputes Automation: Protect Your MRR with Effortless Chargeback Management

Tom-Chris Emewulu
Marketing Lead, Chargeflow
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Chargebacks?
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Recover 4x more chargebacks and prevent up to 90% of incoming ones, powered by AI and a global network of 15,000 merchants.

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TL;DR:

Subscription business owners using platforms like Chargebee see chargebacks as an unavoidable growth tax, but it doesn't have to be that way. Chargeflow automation simplifies chargeback managment by helping you stop chargebacks before they happen. Learn how it works.

Every subscription business owner knows that chargebacks are a nightmare. They’re a default loss leader in today's set-it-and-forget-it economy. Managing them manually is largely ineffective. You might win a few disputes. But the time and effort rarely match the payoff.

This guide shows you how to eliminate that drain using Chargeflow’s AI-powered platform for Chargebee merchants. Imagine preventing Chargebee disputes before they happen and automatically canceling high-risk subscriptions – without lifting a finger!

No missed deadlines. No manual back-and-forth. No wasted hours. Just protected revenue, automated compliance, and more time to grow.

Before we dive into the step-by-step process, let's quickly review the subscription chargeback workflow – and where automation makes all the difference.

Unraveling the Chargeback Threat to Subscription Business

Subscription businesses thrive on predictable monthly recurring revenue (MRR). 96% of companies expect revenue growth this year, with two-thirds expecting more than 20% growth, according to Chargebee's 2024 Merchant Survey.

But that predictability masks a growing threat: chargebacks. For high-growth SaaS and recurring commerce, this silent threat can quietly erode margins, undermine unit economics, and trigger downstream risks investors don't overlook.

Hence, while recurring billing delivers revenue visibility and higher customer lifetime value, it also leaves merchants uniquely exposed. Some industry reports estimate that subscription businesses face 4-10x more chargebacks than one-time transactions.

Why?

  • Customer Oversight: Cardholders often forget they subscribed to services, and mistake legitimate renewals for fraud.
  • First-party Fraud: Some buyers attempt to game the system with friendly fraud, claiming unauthorized charges after enjoying the service.
  • Merchant Missteps: Inadequate internal controls or avoidable merchant errors can equally open doors to third-party fraud, resulting in costly chargebacks.

Card networks know this. Major card brands, including Visa, Mastercard, Amex, Discover, and UnionPay, often assign subscription-based merchants to higher-risk MCC codes like 5968 (Continuity/Subscription Merchant). This may lead to increased scrutiny, higher processing fees, and stricter chargeback thresholds, depending on the merchant's chargeback performance and acquirer policies.

Why Manual Chargeback Management Fails

Historically, chargeback management hasn't favored merchants. Between inconsistent dispute representment rules, tight response windows, and shifting processor expectations, merchants often find themselves at a structural disadvantage.

It's no surprise that eCommerce merchants contest just over half (54.2%) of the chargebacks they receive. And even when they win, nearly 5% of those cases result in a second chargeback, according to our recent chargeback statistics.

Manual workflows rarely scale to meet dispute volume or response deadlines.

For subscription businesses, the challenges are even steeper. Evidence spans multiple billing cycles, making it tedious and time-consuming to compile. The need to prove authorization and utility (e.g., login activity, activity logs, or prior invoice history) means you'd be digging through siloed systems – CRMs, billing platforms, support tickets, social media – just to respond to a single dispute.

That's why chargeback automation is the best option for handling Chargebee disputes.

The Power of Automation in Chargebee Disputes

Chargebee chargeback processing follows the traditional subscription chargeback workflow:

  1. A customer files a dispute with their card issuer.
  2. The card issuer reviews the claim and, if merit is established, grants a chargeback.
  3. Chargebee receives a notification from the payment gateway through a webhook and alerts you, the merchant, citing a code on why the dispute happened.
  4. You then choose your response: accept the chargeback (case closed) or dispute it by submitting evidence.
  5. Customers have 45 to 180 days (up to 13 months for SEPA) to dispute a transaction.
  6. Merchants typically have 7 to 10 days to dispute a chargeback.

Chargeflow’s trusted AI-driven platform simplifies this process by helping you stop chargebacks before they happen. It helps you track high-risk subscriptions, triggering seamless cancellations. No chargebacks incurred equals compliance with card network rules and zero account restrictions!

Chargebee chargeback process

How Chargeflow transforms Chargebee disputes:

  • Proactive Dispute Prevention: Chargeflow AI identifies at-risk transactions (e.g., potential friendly fraud) and recommends proactive steps like customer outreach to stop disputes before they start.
  • Subscription Cancellation Automation: Chargeflow instantly cancels active subscriptions upon detecting a chargeback, preventing future disputes and ensuring compliance with card network rules. Visa's reason code 13.3 and Mastercard's 4853 both prohibit continued billing after a service-related dispute.
  • Real-Time Analytics: Chargeflow AI monitors chargeback ratios, win rates, and MRR impacts, empowering data-driven growth in a unified dashboard.

Step-by-Step: How Chargeflow Automates Chargebee Disputes

Chargeflow’s seamless integration with Chargebee eliminates chargeback headaches in six simple steps. No technical expertise or long-term contracts are required.

  • Step 1: Seamless Integration
    • Syncs subscription and payment data from Chargebee efficiently.
    • Supports fraud alerts from Verifi and Ethoca for immediate protection.
  • Step 2: Benchmarking for Evidence-Based Case Management
    • AI gathers transaction history, customer history, and billing data from Chargebee.
    • Calculate ChargeScore®, a proprietary risk score to assess dispute success likelihood.
  • Step 3: Proactive Chargeback Prevention
    • The system flags high-risk transactions and recommends retries, outreach, or refunds before disputes arise.
    • Reduces chargeback occurrences by up to 90% across all reason codes.
  • Step 5: Automatic Subscription Cancellations
    • Cancels disputed or vulnerable subscriptions to prevent future disputes.
    • Integrates with Chargebee’s customer portal for a seamless user experience.
  • Step 6: Real-Time Insights for MRR Growth
    • Tracks chargeback ratios, recovery rates, and MRR impacts in a unified intelligent dashboard.
    • Alerts you to high chargeback risks or revenue dips for proactive action.

Over 15,000 brands have embraced Chargeflow’s AI-powered platform designed for chargeback prevention, recovery, and insights. The seamless, omni-platform integration offers a unified workflow.

Why Chargeflow is the Game-Changer for Subscription Businesses: A Case Study of Rejuvia

Philadelphia, PA-based Rejuvia was founded in 2018 as a family-owned health and wellness brand. The brand specializes in natural products that help busy customers improve sleep, reduce stress, and enhance well-being. Rejuvia's has scaled to a mid-seven-figure revenue stream, driven by a deep understanding of the business sector.

But like most subscription providers, Rejuvia faced significant hurdles with manual chargeback processes. They needed a transformative solution to boost win rates by 3-4x and reclaim operational excellence.

The Solution: Rejuvia adopted Chargeflow’s AI-powered platform for autopilot chargeback management. The system automated dispute prevention, evidence filing, and subscription cancellations, leveraging extensive data points to build winning cases.

The Results: Since implementing Chargeflow, Rejuvia achieved an 82% chargeback win rate, a remarkable 228% increase from their baseline. The automation saved 94 hours of manual processing, freeing resources for strategic growth initiatives.

Read the full case study.

Take Control of Chargebee Chargebacks Automatically

Chargebacks pose a significant threat to subscription-based businesses. They erode MRR, threaten payment privileges, and damage brand reputation.

With AI-driven fraud on the rise, manual dispute management just can’t keep up. It's like playing catch-up with scammers, with win rates as low as 8-12%.

Chargeflow flips the script. Our AI-powered automation, seamlessly integrated with Chargebee, proactively prevents and automates subscription cancellations for high-risk transactions on autopilot.

👉 Book a demo to see Chargeflow's advanced analytics and subscription chargeback automation in action. By the way, you only pay for results when you onboard Chargeflow.

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Chargebacks?
No longer your problem.

Recover 4x more chargebacks and prevent up to 90% of incoming ones, powered by AI and a global network of 15,000 merchants.

192+ reviews
No credit card needed.
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